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Resource CodeSystem/FHIR Server from package hl7.fhir.uv.genomics-reporting#current (31 ms)

Package hl7.fhir.uv.genomics-reporting
Type CodeSystem
Id Id
FHIR Version R4
Source http://hl7.org/fhir/uv/genomics-reporting/https://build.fhir.org/ig/HL7/genomics-reporting/CodeSystem-clinvar-evidence-level-custom-cs.html
Url http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/clinvar-evidence-level-custom-cs
Version 3.0.1-SNAPSHOT
Status active
Date 2024-10-29T16:58:35+00:00
Name ClinVarEvidenceLevelCustomCS
Title ClinVar Evidence Level Example Codes
Experimental True
Realm uv
Authority hl7
Description ClinVar contains examples of evidence level concepts that are not conflated with clinical significance. These can be found on ClinVar https://www.ncbi.nlm.nih.gov/clinvar/docs/review_status/ . These examples are informational only, for copyright information contact the relevant source.
Content complete

Resources that use this resource

ValueSet
evidence-level-example-vs Evidence Level Examples

Resources that this resource uses

No resources found



Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: CodeSystem clinvar-evidence-level-custom-cs

This case-sensitive code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/clinvar-evidence-level-custom-cs defines the following codes:

CodeDisplayDefinition
4-star 4 starSupported by practice guideline
3-star 3 starSupported by expert panel review
2-star 2 starSupported by submission by multiple-submitters with documentation of criteria for assertion
1-star 1 starSingle submitter providing interpretation and documentation of criteria for assertion
no-star no starsubmitted, no evidence

Source

{
  "resourceType" : "CodeSystem",
  "id" : "clinvar-evidence-level-custom-cs",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem clinvar-evidence-level-custom-cs</b></p><a name=\"clinvar-evidence-level-custom-cs\"> </a><a name=\"hcclinvar-evidence-level-custom-cs\"> </a><a name=\"clinvar-evidence-level-custom-cs-en-US\"> </a><p>This case-sensitive code system <code>http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/clinvar-evidence-level-custom-cs</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">4-star<a name=\"clinvar-evidence-level-custom-cs-4-star\"> </a></td><td>4 star</td><td>Supported by practice guideline</td></tr><tr><td style=\"white-space:nowrap\">3-star<a name=\"clinvar-evidence-level-custom-cs-3-star\"> </a></td><td>3 star</td><td>Supported by expert panel review</td></tr><tr><td style=\"white-space:nowrap\">2-star<a name=\"clinvar-evidence-level-custom-cs-2-star\"> </a></td><td>2 star</td><td>Supported by submission by multiple-submitters with documentation of criteria for assertion</td></tr><tr><td style=\"white-space:nowrap\">1-star<a name=\"clinvar-evidence-level-custom-cs-1-star\"> </a></td><td>1 star</td><td>Single submitter providing interpretation and documentation of criteria for assertion</td></tr><tr><td style=\"white-space:nowrap\">no-star<a name=\"clinvar-evidence-level-custom-cs-no-star\"> </a></td><td>no star</td><td>submitted, no evidence</td></tr></table></div>"
  },
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode" : "cg"
    }
  ],
  "url" : "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/clinvar-evidence-level-custom-cs",
  "version" : "3.0.1-SNAPSHOT",
  "name" : "ClinVarEvidenceLevelCustomCS",
  "title" : "ClinVar Evidence Level Example Codes",
  "status" : "active",
  "experimental" : true,
  "date" : "2024-10-29T16:58:35+00:00",
  "publisher" : "HL7 International / Clinical Genomics",
  "contact" : [
    {
      "name" : "HL7 International / Clinical Genomics",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://www.hl7.org/Special/committees/clingenomics"
        },
        {
          "system" : "email",
          "value" : "cg@lists.HL7.org"
        }
      ]
    }
  ],
  "description" : "ClinVar contains examples of evidence level concepts that are not conflated with clinical significance. These can be found on ClinVar https://www.ncbi.nlm.nih.gov/clinvar/docs/review_status/ . These examples are informational only, for copyright information contact the relevant source.",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code" : "001",
          "display" : "World"
        }
      ]
    }
  ],
  "caseSensitive" : true,
  "content" : "complete",
  "count" : 5,
  "concept" : [
    {
      "code" : "4-star",
      "display" : "4 star",
      "definition" : "Supported by practice guideline"
    },
    {
      "code" : "3-star",
      "display" : "3 star",
      "definition" : "Supported by expert panel review"
    },
    {
      "code" : "2-star",
      "display" : "2 star",
      "definition" : "Supported by submission by multiple-submitters with documentation of criteria for assertion"
    },
    {
      "code" : "1-star",
      "display" : "1 star",
      "definition" : "Single submitter providing interpretation and documentation of criteria for assertion"
    },
    {
      "code" : "no-star",
      "display" : "no star",
      "definition" : "submitted, no evidence"
    }
  ]
}

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